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Taxonomies are fundamental to many real-world applications in various domains, serving as structural representations of knowledge. To deal with the increasing volume of new concepts needed to be organized as taxonomies, researchers turn to automatically completion of an existing taxonomy with new concepts. In this paper, we propose TaxoEnrich, a new taxonomy completion framework, which effectively leverages both semantic features and structural information in the existing taxonomy and offers a better representation of candidate position to boost the performance of taxonomy completion. Specifically, TaxoEnrich consists of four components: (1) taxonomy-contextualized embedding which incorporates both semantic meanings of concept and taxonomic relations based on powerful pretrained language models; (2) a taxonomy-aware sequential encoder which learns candidate position representations by encoding the structural information of taxonomy; (3) a query-aware sibling encoder which adaptively aggregates candidate siblings to augment candidate position representations based on their importance to the query-position matching; (4) a query-position matching model which extends existing work with our new candidate position representations. Extensive experiments on four large real-world datasets from different domains show that TaxoEnrich achieves the best performance among all evaluation metrics and outperforms previous state-of-the-art methods by a large margin. 

Graph convolutional networks (GCNs), aiming to obtain node embeddings by integrating high-order neighborhood information through stacked graph convolution layers, have demonstrated great power in many network analysis tasks such as node classification and link prediction. However, a fundamental weakness of GCNs, that is, topological limitations, including over-smoothing and local homophily of topology, limits their ability to represent networks. Existing studies for solving these topological limitations typically focus only on the convolution of features on network topology, which inevitably relies heavily on network structures. Moreover, most networks are text-rich, so it is important to integrate not only document-level information, but also the local text information which is particularly significant while often ignored by the existing methods. To solve these limitations, we propose BiTe-GCN, a novel GCN architecture modeling via bidirectional convolution of topology and features on text-rich networks. Specifically, we first transform the original text-rich network into an augmented bi-typed heterogeneous network, capturing both the global document-level information and the local text-sequence information from texts.We then introduce discriminative convolution mechanisms, which performs convolution on this augmented bi-typed network, realizing the convolutions of topology and features altogether in the same system, and learning different contributions of these two parts (i.e., network part and text part), automatically for the given learning objectives. Extensive experiments on text-rich networks demonstrate that our new architecture outperforms the state-of-the-arts by a breakout improvement. Moreover, this architecture can also be applied to several e-commerce search scenes such as JD searching, and experiments on JD dataset show the superiority of the proposed architecture over the baseline methods. 

Scientific literature analysis needs fine-grained named entity recognition (NER) to provide a wide range of information for scientific discovery. For example, chemistry research needs to study dozens to hundreds of distinct, fine-grained entity types, making consistent and accurate annotation difficult even for crowds of domain experts. On the other hand, domain-specific ontologies and knowledge bases (KBs) can be easily accessed, constructed, or integrated, which makes distant supervision realistic for fine-grained chemistry NER. In distant supervision, training labels are generated by matching mentions in a document with the concepts in the knowledge bases (KBs). However, this kind of KB-matching suffers from two major challenges: incomplete annotation and noisy annotation. We propose ChemNER, an ontology-guided, distantly-supervised method for fine-grained chemistry NER to tackle these challenges. It leverages the chemistry type ontology structure to generate distant labels with novel methods of flexible KB-matching and ontology-guided multi-type disambiguation. It significantly improves the distant label generation for the subsequent sequence labeling model training. We also provide an expert-labeled, chemistry NER dataset with 62 fine-grained chemistry types (e.g., chemical compounds and chemical reactions). Experimental results show that ChemNER is highly effective, outperforming substantially the state-of-the-art NER methods (with .25 absolute F1 score improvement). 

Biomedical named entity recognition (BioNER) is a fundamental step for mining COVID-19 literature. Existing BioNER datasets cover a few common coarse-grained entity types (e.g., genes, chemicals, and diseases), which cannot be used to recognize highly domain-specific entity types (e.g., animal models of diseases) or emerging ones (e.g., coronaviruses) for COVID-19 studies. We present CORD-NER, a fine-grained named entity recognized dataset of COVID-19 literature (up until May 19, 2020). CORD-NER contains over 12 million sentences annotated via distant supervision. Also included in CORD-NER are 2,000 manually-curated sentences as a test set for performance evaluation. CORD-NER covers 75 fine-grained entity types. In addition to the common biomedical entity types, it covers new entity types specifically related to COVID-19 studies, such as coronaviruses, viral proteins, evolution, and immune responses. The dictionaries of these fine-grained entity types are collected from existing knowledge bases and human-input seed sets. We further present DISTNER, a distantly supervised NER model that relies on a massive unlabeled corpus and a collection of dictionaries to annotate the COVID-19 corpus. DISTNER provides a benchmark performance on the CORD-NER test set for future research.